The gene Ids must be present in the geneid column. This is necessary for plotting gene label on the points P-values or adjusted P-values cutoff for up and downregulated genes Log or absolute fold change cutoff for up and downregulated genes Name of a column having P-values or adjusted P-values
Name of a column having log or absolute fold change values Pandas dataframe table having atleast gene IDs, log fold change, P-values or adjusted P-values columns How to use bioinfokit? Gene expression analysis Volcano plotī_exp.volcano(df, lfc, pv, lfc_thr, pv_thr, color, valpha, geneid, genenames, gfont, dim, r, ar,ĭotsize, markerdot, sign_line, gstyle, show, figtype, axtickfontsize, axtickfontname, axlabelfontsize,Īxlabelfontname, axxlabel, axylabel, xlm, ylm, plotlegend, legendpos, figname, legendanchor, legendlabels) Parameters _version_ '0.9.6' Download statistics Weekly Install using pip for Python 3 (easiest way) How to install?īioinfokit is developed in Python 3 and tested with Python versions >= 3.6īioinfokit can be installed using pip, easy_install and git. Visualize, and interpret the biological data generated from genome-scale omics experiments. The bioinfokit toolkit aimed to provide various easy-to-use functionalities to analyze, One sample and two sample (independent and paired) t-tests.
Bioinformatics file readers and processing (FASTA, FASTQ, and VCF).FASTQ batch downloads from SRA database.Principal component analysis (PCA) biplots.Principal component analysis (PCA) loadings plots.
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